R Utilities for GFF Files
Test consistency and order of a GFF file
Test consistency and order of a GFF3 file
Test consistency and order of a GTF file
Analyses the feature type hierarchy of a GFF file
Creates a features pair file from a GFF file
Creates a features pair file from a GFF file
Creates a features pair file from a GTF file
Summarizes the number of elements of each type in each chromosome of a...
Summarizes the number of features of each type in a GFF file
Creates a features path file from a GFF file
Converts a GTF file into a GFF3 file
Creates a features path file from a GTF file
Pipe operator
Plots or exports an image of the feature tree from a GFF file
Creates a SAF file from a GTF/GFF3 features for the given pairs of blo...
Creates a SAF file from a GFF3 for the given pairs of blocks and featu...
Generates SAF formatted data from a features path file for the given b...
Sorts a GTF/GFF3 file
Sorts a GFF3 file
Sorts a GTF file
R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.