exampleRAD_mapping dataset

Example output dataset of polyRAD::PipelineMapping2Parents function

polymapR packageRead PDF manual
  • Maintainer: Peter Bourke
  • License: GPL
  • Last published: 2024-05-31

About the dataset

  • Number of columns: 23
  • Class: RADdata

Column names and types (First 10)

  • alleleDepth:matrixarray
  • alleles2loc:integer
  • locTable:data.frame
  • possiblePloidies:list
  • locDepth:matrixarray
  • depthRatio:matrixarray
  • antiAlleleDepth:matrixarray
  • alleleNucleotides:character
  • alleleFreq:numeric
  • depthSamplingPermutations:matrixarray
  • genotypeLikelihood:list
  • likelyGeno_donor:matrixarray
  • likelyGeno_recurrent:matrixarray
  • pldcombos:matrixarray
  • priorProb:list
  • priorProbPloidies:list
  • donorPloidies:list
  • recurrentPloidies:list
  • ploidyChiSq:matrixarray
  • ploidyChiSqP:matrixarray
  • posteriorProb:list
  • alleleLinkages:list
  • priorProbLD:list