gsets.msigdb.pnas dataset

Functional Gene Sets Used in GSEA PNAS Publication

GANPAdata packageRead PDF manual
  • Maintainer: Zhaoyuan Fang
  • License: GPL-2
  • Last published: 2012-10-29

About the dataset

  • Number of columns: 522
  • Class: list

Column names and types (First 10)

  • 41bbPathway:character
  • ace2Pathway:character
  • acetaminophenPathway:character
  • achPathway:character
  • actinYPathway:character
  • agpcrPathway:character
  • ahspPathway:character
  • aifPathway:character
  • akap13Pathway:character
  • akap96Pathway:character
  • akapCentrosomePathway:character
  • aktPathway:character
  • alkPathway:character
  • alternativePathway:character
  • amiPathway:character
  • anthraxPathway:character
  • appPathway:character
  • arapPathway:character
  • arenrf2Pathway:character
  • arfPathway:character
  • argininecPathway:character
  • asbcellPathway:character
  • at1rPathway:character
  • atmPathway:character
  • atrbrcaPathway:character
  • badPathway:character
  • bbcellPathway:character
  • bcl2family_and_reg_network:character
  • bcrPathway:character
  • betaoxidationPathway:character
  • biopeptidesPathway:character
  • blymphocytePathway:character
  • botulinPathway:character
  • breast_cancer_estrogen_signalling:character
  • ca_nf_at_signalling:character
  • cacamPathway:character
  • calcineurinPathway:character
  • cardiacegfPathway:character
  • carm1Pathway:character
  • carm-erPathway:character
  • caspase_activity:character
  • caspasePathway:character
  • cblPathway:character
  • ccr3Pathway:character
  • ccr5Pathway:character
  • cd40Pathway:character
  • cdc25Pathway:character
  • cdc42racPathway:character
  • cdk5Pathway:character
  • cdmacPathway:character
  • cell_adhesion:character
  • cell_adhesion_molecule_activity:character
  • cell_adhesion_receptor_activity:character
  • Cell_Cycle:character
  • cell_cycle_arrest:character
  • cell_cycle_checkpoint:character
  • cell_cycle_checkpointII:character
  • cell_cycle_regulator:character
  • cell_death:character
  • cell_growth_and_or_maintenance:character
  • cell_motility:character
  • cell_proliferation:character
  • cell_surface_receptor_linked_signal_transduction:character
  • cell2cellPathway:character
  • cellcyclePathway:character
  • ceramidePathway:character
  • cftrPathway:character
  • chemicalPathway:character
  • chrebpPathway:character
  • circadianPathway:character
  • ck1Pathway:character
  • classicPathway:character
  • Complement_Activation_Classical:character
  • compPathway:character
  • cptPathway:character
  • CR_ANGIOG:character
  • CR_CAM:character
  • CR_CANCER_TESTIS:character
  • CR_CELL_CYCLE:character
  • CR_CYTOSKELETON:character
  • CR_DEATH:character
  • CR_DNA_MET_AND_MOD:character
  • CR_HORMONAL_FUNCTIONS:character
  • CR_IMMUNE_FUNCTION:character
  • CR_PROTEIN_MOD:character
  • CR_REPAIR:character
  • CR_SIGNALLING:character
  • CR_TRANSCRIPTION_FACTORS:character
  • CR_TRANSPORT:character
  • CR_TRANSPORT_OF_VESICLES:character
  • crebPathway:character
  • cremPathway:character
  • cskPathway:character
  • ctla4Pathway:character
  • ctlPathway:character
  • cxcr4Pathway:character
  • cytokinePathway:character
  • d4gdiPathway:character
  • dbpbPathway:character
  • dcPathway:character
  • deathPathway:character
  • DNA_DAMAGE_SIGNALLING:character
  • dnafragmentPathway:character
  • dreamPathway:character
  • drug_resistance_and_metabolism:character
  • ecmPathway:character
  • edg1Pathway:character
  • eea1Pathway:character
  • EGF_receptor_signaling_pathway:character
  • egfPathway:character
  • egfr_smrtePathway:character
  • Eicosanoid_Synthesis:character
  • eif2Pathway:character
  • eif4Pathway:character
  • electron_transport:character
  • Electron_Transport_Chain:character
  • electron_transporter_activity:character
  • eosinophilsPathway:character
  • ephA4Pathway:character
  • eponfkbPathway:character
  • epoPathway:character
  • erbb3Pathway:character
  • erbb4Pathway:character
  • erk5Pathway:character
  • erkPathway:character
  • erythPathway:character
  • etcPathway:character
  • etsPathway:character
  • extrinsicPathway:character
  • fasPathway:character
  • Fatty_Acid_Degradation:character
  • fatty_acid_metabolism:character
  • Fatty_Acid_Synthesis:character
  • fbw7Pathway:character
  • fcer1Pathway:character
  • feederPathway:character
  • fibrinolysisPathway:character
  • flumazenilPathway:character
  • fmlppathway:character
  • fosbPathway:character
  • freePathway:character
  • fxrPathway:character
  • G13_Signaling_Pathway:character
  • g1Pathway:character
  • g1pPathway:character
  • g2Pathway:character
  • gabaPathway:character
  • gata3Pathway:character
  • gcrPathway:character
  • ghPathway:character
  • gleevecPathway:character
  • Glycogen_Metabolism:character
  • glycolysisPathway:character
  • gpcrPathway:character
  • GPCRs_Class_A_Rhodopsin-like:character
  • GPCRs_Class_A_Rhodopsin-like_2:character
  • GPCRs_Class_B_Secretin-like:character
  • GPCRs_Class_C_Metabotropic_glutamate_pheromone:character
  • gsk3Pathway:character
  • gsPathway:character
  • hbxPathway:character
  • hcmvPathway:character
  • hdacPathway:character
  • hifPathway:character
  • hivnefPathway:character
  • hsp27Pathway:character
  • huntingtonPathway:character
  • ifnaPathway:character
  • ifngPathway:character
  • igf1mtorPathway:character
  • igf1Pathway:character
  • igf1rPathway:character
  • il10Pathway:character
  • Il12Pathway:character
  • il17Pathway:character
  • il18Pathway:character
  • il1rPathway:character
  • il22bpPathway:character
  • il2Pathway:character
  • il2rbPathway:character
  • il3Pathway:character
  • il4Pathway:character
  • il5Pathway:character
  • il6Pathway:character
  • il7Pathway:character
  • Inflammatory_Response_Pathway:character
  • inflamPathway:character
  • insulin_signalling:character
  • insulinPathway:character
  • integrinPathway:character
  • intrinsicPathway:character
  • ionPathway:character
  • keratinocytePathway:character
  • ketonebodiesPathway:character
  • krebPathway:character
  • Krebs-TCA_Cycle:character
  • lairPathway:character
  • ldlPathway:character
  • lechtinPathway:character
  • leptinPathway:character
  • longevityPathway:character
  • lymphocytePathway:character
  • malatePathway:character
  • malatexPathway:character
  • MAP_kinase_activity:character
  • MAP_kinase_kinase_activity:character
  • MAP00010_Glycolysis_Gluconeogenesis:character
  • MAP00020_Citrate_cycle_TCA_cycle:character
  • MAP00030_Pentose_phosphate_pathway:character
  • MAP00051_Fructose_and_mannose_metabolism:character
  • MAP00052_Galactose_metabolism:character
  • MAP00062_Fatty_acid_biosynthesis_path_2:character
  • MAP00071_Fatty_acid_metabolism:character
  • MAP00100_Sterol_biosynthesis:character
  • MAP00120_Bile_acid_biosynthesis:character
  • MAP00140_C21_Steroid_hormone_metabolism:character
  • MAP00150_Androgen_and_estrogen_metabolism:character
  • MAP00190_Oxidative_phosphorylation:character
  • MAP00193_ATP_synthesis:character
  • MAP00195_Photosynthesis:character
  • MAP00220_Urea_cycle_and_metabolism_of_amino_groups:character
  • MAP00230_Purine_metabolism:character
  • MAP00240_Pyrimidine_metabolism:character
  • MAP00251_Glutamate_metabolism:character
  • MAP00252_Alanine_and_aspartate_metabolism:character
  • MAP00260_Glycine_serine_and_threonine_metabolism:character
  • MAP00271_Methionine_metabolism:character
  • MAP00272_Cysteine_metabolism:character
  • MAP00280_Valine_leucine_and_isoleucine_degradation:character
  • MAP00310_Lysine_degradation:character
  • MAP00330_Arginine_and_proline_metabolism:character
  • MAP00340_Histidine_metabolism:character
  • MAP00350_Tyrosine_metabolism:character
  • MAP00360_Phenylalanine_metabolism:character
  • MAP00361_gamma_Hexachlorocyclohexane_degradation:character
  • MAP00380_Tryptophan_metabolism:character
  • MAP00400_Phenylalanine_tyrosine_and_tryptophan_biosynthesis:character
  • MAP00410_beta_Alanine_metabolism:character
  • MAP00430_Taurine_and_hypotaurine_metabolism:character
  • MAP00450_Selenoamino_acid_metabolism:character
  • MAP00460_Cyanoamino_acid_metabolism:character
  • MAP00480_Glutathione_metabolism:character
  • MAP00500_Starch_and_sucrose_metabolism:character
  • MAP00510_N_Glycans_biosynthesis:character
  • MAP00512_O_Glycans_biosynthesis:character
  • MAP00530_Aminosugars_metabolism:character
  • MAP00531_Glycosaminoglycan_degradation:character
  • MAP00532_Chondroitin_Heparan_sulfate_biosynthesis:character
  • MAP00533_Keratan_sulfate_biosynthesis:character
  • MAP00561_Glycerolipid_metabolism:character
  • MAP00562_Inositol_phosphate_metabolism:character
  • MAP00590_Prostaglandin_and_leukotriene_metabolism:character
  • MAP00600_Sphingoglycolipid_metabolism:character
  • MAP00601_Blood_group_glycolipid_biosynthesis_lact_series:character
  • MAP00602_Blood_group_glycolipid_biosynthesis_neolact_series:character
  • MAP00603_Globoside_metabolism:character
  • MAP00620_Pyruvate_metabolism:character
  • MAP00630_Glyoxylate_and_dicarboxylate_metabolism:character
  • MAP00632_Benzoate_degradation:character
  • MAP00640_Propanoate_metabolism:character
  • MAP00650_Butanoate_metabolism:character
  • MAP00670_One_carbon_pool_by_folate:character
  • MAP00680_Methane_metabolism:character
  • MAP00710_Carbon_fixation:character
  • MAP00720_Reductive_carboxylate_cycle_CO2_fixation:character
  • MAP00740_Riboflavin_metabolism:character
  • MAP00760_Nicotinate_and_nicotinamide_metabolism:character
  • MAP00790_Folate_biosynthesis:character
  • MAP00860_Porphyrin_and_chlorophyll_metabolism:character
  • MAP00910_Nitrogen_metabolism:character
  • MAP00970_Aminoacyl_tRNA_biosynthesis:character
  • MAP03020_RNA_polymerase:character
  • MAP03070_Type_III_secretion_system:character
  • MAPK_Cascade:character
  • MAPKKK_cascade:character
  • mapkPathway:character
  • Matrix_Metalloproteinases:character
  • mcalpainPathway:character
  • mef2dPathway:character
  • methioninePathway:character
  • metPathway:character
  • mitochondriaPathway:character
  • mitrPathway:character
  • monocytePathway:character
  • mprPathway:character
  • mRNA_binding_activity:character
  • mRNA_processing:character
  • mRNA_splicing:character
  • mrpPathway:character
  • mspPathway:character
  • mta3Pathway:character
  • mtorPathway:character
  • muscle_myosin:character
  • myosinPathway:character
  • ndkDynaminPathway:character
  • neurotransmittersPathway:character
  • neutrophilPathway:character
  • nfatPathway:character
  • nfkbPathway:character
  • ngfPathway:character
  • nkcellsPathway:character
  • nktPathway:character
  • no1Pathway:character
  • no2il12Pathway:character
  • nos1Pathway:character
  • notchPathway:character
  • nthiPathway:character
  • ox40Pathway:character
  • p27Pathway:character
  • p35alzheimersPathway:character
  • p38mapkPathway:character
  • p53_signalling:character
  • p53hypoxiaPathway:character
  • p53Pathway:character
  • par1Pathway:character
  • parkinPathway:character
  • parkinsonsPathway:character
  • pdgfPathway:character
  • pelp1Pathway:character
  • Pentose_Phosphate_Pathway:character
  • pentosePathway:character
  • pepiPathway:character
  • pgc1aPathway:character
  • pitx2Pathway:character
  • pkcPathway:character
  • plcdPathway:character
  • plcePathway:character
  • plcPathway:character
  • plk3Pathway:character
  • pmlPathway:character
  • pparaPathway:character
  • ppargPathway:character
  • pparPathway:character
  • Proteasome_Degradation:character
  • proteasomePathway:character
  • ps1Pathway:character
  • ptc1Pathway:character
  • ptdinsPathway:character
  • ptenPathway:character
  • pyk2Pathway:character
  • rabPathway:character
  • rac1Pathway:character
  • raccycdPathway:character
  • radiation_sensitivity:character
  • ranklPathway:character
  • ranPathway:character
  • rarPathway:character
  • rarrxrPathway:character
  • rasPathway:character
  • rbPathway:character
  • reckPathway:character
  • reelinPathway:character
  • relaPathway:character
  • rhoPathway:character
  • rnaPathway:character
  • S1P_Signaling:character
  • s1pPathway:character
  • SA_B_CELL_RECEPTOR_COMPLEXES:character
  • SA_BONE_MORPHOGENETIC:character
  • SA_CASPASE_CASCADE:character
  • SA_DAG1:character
  • SA_FAS_SIGNALLING:character
  • SA_G1_AND_S_PHASES:character
  • SA_G2_AND_M_PHASES:character
  • SA_MMP_CYTOKINE_CONNECTION:character
  • SA_PROGRAMMED_CELL_DEATH:character
  • SA_PTEN_PATHWAY:character
  • SA_REG_CASCADE_OF_CYCLIN_EXPR:character
  • SA_TRKA_RECEPTOR:character
  • salmonellaPathway:character
  • sarsPathway:character
  • setPathway:character
  • shhPathway:character
  • SIG_BCR_Signaling_Pathway:character
  • SIG_CD40PATHWAYMAP:character
  • SIG_CHEMOTAXIS:character
  • SIG_IL4RECEPTOR_IN_B_LYPHOCYTES:character
  • SIG_InsulinReceptorPathwayInCardiacMyocytes:character
  • SIG_PIP3_signaling_in_B_lymphocytes:character
  • SIG_PIP3SIGINCARDIACMYOCTES:character
  • SIG_Regulation_of_the_actin_cytoskeleton_by_Rho_GTPases:character
  • skp2e2fPathway:character
  • slrp2Pathway:character
  • slrpPathway:character
  • soddPathway:character
  • sppaPathway:character
  • spryPathway:character
  • srcRPTPPathway:character
  • ST_ADRENERGIC:character
  • ST_B_Cell_Antigen_Receptor:character
  • ST_Dictyostelium_discoideum_cAMP_Chemotaxis_Pathway:character
  • ST_Dictyostelium_discoideum_cAMP_Receptor_G_Protein_Independent_Pathways:character
  • ST_Differentiation_Pathway_in_PC12_Cells:character
  • ST_ERK1_ERK2_MAPK_Pathway:character
  • ST_Fas_Signaling_Pathway:character
  • ST_G_alpha_5_Pathway:character
  • ST_G_alpha_i_Pathway_:character
  • ST_G_Protein_Independent_7_Transmembrane:character
  • ST_G_Protein_Independent_7_Transmembrane_Receptor_Signaling:character
  • ST_Ga12_Pathway:character
  • ST_Ga13_Pathway:character
  • ST_Gaq_Pathway:character
  • ST_GRANULE_CELL_SURVIVAL_PATHWAY:character
  • ST_IL_13_PATHWAY:character
  • ST_Integrin_Signaling_Pathway:character
  • ST_Interferon_gamma_Pathway:character
  • ST_Interleukin_13_Pathway:character
  • ST_Interleukin_4_Pathway:character
  • ST_Jak_STAT_Pathway:character
  • ST_JNK_MAPK_Pathway:character
  • ST_MONOCYTE_AD_PATHWAY:character
  • ST_p38_MAPK_Pathway:character
  • ST_PAC1_RECEPTOR_PATHWAY:character
  • ST_Phosphoinositide_3_Kinase_Pathway:character
  • ST_STAT3_Pathway:character
  • ST_T_Cell_Signal_Transduction:character
  • ST_Tumor_Necrosis_Factor_Pathway:character
  • ST_Type_I_Interferon_Pathway:character
  • ST_Wnt_beta_catenin_Pathway:character
  • ST_Wnt_Ca2_cyclic_GMP_Pathway:character
  • stat3Pathway:character
  • stemPathway:character
  • stressPathway:character
  • tall1Pathway:character
  • tcapoptosisPathway:character
  • tcraPathway:character
  • tcrMoleculePathway:character
  • tcrPathway:character
  • tcytotoxicPathway:character
  • telPathway:character
  • tercPathway:character
  • tertPathway:character
  • TGF_Beta_Signaling_Pathway:character
  • tgfbPathway:character
  • th1th2Pathway:character
  • thelperPathway:character
  • tidPathway:character
  • tnf_and_fas_network:character
  • tnfr1Pathway:character
  • tnfr2Pathway:character
  • tob1Pathway:character
  • tollPathway:character
  • torPathway:character
  • tpoPathway:character
  • trkaPathway:character
  • tRNA_Synthetases:character
  • tsp1Pathway:character
  • tubbyPathway:character
  • tumor_supressor:character
  • ucalpainPathway:character
  • ureacyclePathway:character
  • vegfPathway:character
  • vifPathway:character
  • vipPathway:character
  • vitcbPathway:character
  • vobesityPathway:character
  • VOXPHOS:character
  • Wnt_Signaling:character
  • wntPathway:character
  • FA:character
  • GLUCO:character
  • GLYCOGEN:character
  • GLYCOL:character
  • GO_0005739:character
  • GO_ROS:character
  • human_mitoDB_6_2002:character
  • INS:character
  • KET:character
  • mitochondr:character
  • PGC:character
  • PYR:character
  • ROS:character
  • TCA:character
  • shh_lisa:character
  • MYC_WT:character
  • MYC_MUT:character
  • INSULIN_2F_DOWN:character
  • INSULIN_2F_UP:character
  • NFKB_INDUCED:character
  • NFKB_REDUCED:character
  • EMT_UP:character
  • EMT_DOWN:character
  • HTERT_DOWN:character
  • HTERT_UP:character
  • ANTI_CD44_UP:character
  • ANTI_CD44_DOWN:character
  • HOXA9_DOWN:character
  • P53_UP:character
  • P53_DOWN:character
  • RAP_UP:character
  • RAP_DOWN:character
  • GLUT_UP:character
  • GLUT_DOWN:character
  • LEU_UP:character
  • LEU_DOWN:character
  • GLUCOSE_UP:character
  • GLUCOSE_DOWN:character
  • BRCA_UP:character
  • BRCA_DOWN:character
  • FRASOR_ER_UP:character
  • FRASOR_ER_DOWN:character
  • ANDROGEN_UP_GENES:character
  • ANDROGEN_GENES_FROM_NETAFFX:character
  • AR_ORTHOS_MAPPED_TO_U133_VIA_NETAFFX:character
  • AR_MOUSE:character
  • AR_MOUSE_PLUS_TESTO_FROM_NETAFFX:character
  • XINACT_MERGED:character
  • TESTIS_GENES_FROM_XHX_AND_NETAFFX:character
  • GNF_FEMALE_GENES:character
  • GATA1_WEISS:character
  • HEMO_TF_LIST_JP:character
  • HOX_LIST_JP:character
  • HUMAN_CD34_ENRICHED_TF_JP:character
  • PROLIF_GENES:character
  • DOWNREG_BY_HOXA9:character
  • UPREG_BY_HOXA9:character
  • KRAS_TOP100_CONTROL:character
  • KRAS_TOP100_KNOCKDOWN:character
  • RAR_UP:character
  • ADULT_LIVER_vs_FETAL_LIVER_GNF2:character
  • FETAL_LIVER_HS_ENRICHED_TF_JP:character
  • CBF_LEUKEMIA_DOWNING_AML:character