Array Based CpG Region Analysis Pipeline
Annotating the filtered probes
Identifying genes for which multiple CpG sites show significant methyl...
Applying delta beta analysis to calculate the difference between cases...
Filtering DNA methylation 450k non_specific probes
Overlapping Student's t-test and delta beta results
Plotting highly different and significant probes annotated by their co...
Overview description of the DNA methylation pattern for cases and cont...
Plotting and exporting methylation profile for candidate genes
An automated analysis applying all ABC.RAP functions in one script
applying t-test analysis
It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.