AMR2.1.1 package

Retrieve Antimicrobial Drug Names and Doses from Clinical Text

Get Properties of an Antibiotic

Add Custom Antimicrobials

Add Custom Microorganisms

Age in Years of Individuals

Split Ages into Age Groups

Deprecated Functions

Options for the AMR package

The AMR Package

Generate Antibiogram: Traditional, Combined, Syndromic, or Weighted-In...

Antibiotic Selectors

Transform Input to an Antibiotic ID

Transform Input to an Antiviral Drug ID

Transform Input to Disk Diffusion Diameters

Transform Input to Minimum Inhibitory Concentrations (MIC)

Transform Arbitrary Input to Valid Microbial Taxonomy

Translate MIC and Disk Diffusion to SIR, or Clean Existing SIR Data

Get ATC Properties from WHOCC Website

Retrieve Antiviral Drug Names and Doses from Clinical Text

Get Properties of an Antiviral Drug

Check Availability of Columns

Determine Bug-Drug Combinations

Count Available Isolates

Define Custom EUCAST Rules

Apply EUCAST Rules

Determine First Isolates

G-test for Count Data

Determine Clinical or Epidemic Episodes

PCA Biplot with ggplot2

AMR Plots with ggplot2

Guess Antibiotic Column

Italicise Taxonomic Families, Genera, Species, Subspecies

Join microorganisms to a Data Set

(Key) Antimicrobials for First Weighted Isolates

Kurtosis of the Sample

Vectorised Pattern Matching with Keyboard Shortcut

Determine Multidrug-Resistant Organisms (MDRO)

Calculate the Mean AMR Distance

Calculate the Matching Score for Microorganisms

Get Properties of a Microorganism

User-Defined Reference Data Set for Microorganisms

Principal Component Analysis (for AMR)

Plotting for Classes sir, mic and disk

Calculate Antimicrobial Resistance

Random MIC Values/Disk Zones/SIR Generation

Predict Antimicrobial Resistance

Skewness of the Sample

Translate Strings from the AMR Package

WHOCC: WHO Collaborating Centre for Drug Statistics Methodology