Linkage Map Construction using the MSTmap Algorithm
Graphical linkage group identity and alignment.
Internal fastMap functions
Additional functions for linkage map construction and manipulation of ...
Break linkage groups of an qtl cross object
Combine linkage maps from multiple qtl cross objects
Consensus genotypes for clonal genotype groups
Find and report genotype clones
Heat map of the estimated pairwise recombination fractions and LOD lin...
Merge linkage groups of an qtl cross object
Extremely fast linkage map construction for qtl objects using MSTmap...
Extremely fast linkage map construction for data frame objects using M...
Parameter initialization function
Profile individual genotype statistics for an R/qtl cross object
Profile individual marker and interval statistics for an R/qtl cross o...
Pull markers from a linkage map.
Push markers into an established R/qtl linkage map.
P-value graph
Very quick estimation of genetic map distances.
Individual genotype statistics for an R/qtl cross object
Individual marker and interval statistics for an R/qtl cross object
Subset an R/qtl object
Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).