Run Allometric Trophic Networks Models
Make L matrix
Make parameter matrix
Initialize an ATN model, following Delmas et al. 2017, Methods in Ecol...
Initialize an ATN model, following Binzer et al. 2016, Global Change B...
Initialize an ATN model, following Schneider et al. 2016, Nature Commu...
Create a food web based on the niche model
Filter Extinct Species
Internal function to remove species from a Scaled model
Internal function to remove species from a Unscaled model
Internal function to remove species from a Unscaled_nuts model
Default parameters for the scaled version of ATN as in Delmas et al. 2...
Default parameters for the scaled version of ATN as in Binzer et al. 2...
Default model parameters as in Schneider et al. 2016
Detect whether a food web is composed of several disconnected sub-netw...
Estimate the Jacobian matrix of a ODE system
Wrapper for lsoda
Plot food web dynamics
Function to remove species from a model class
Run checks on model parameters
Store parameters and functions associated to the scaled version of ATN
Store parameters and functions associated to the scaled version of ATN
Sort custom input
Calculate trophic level of species
Store parameters and functions associated to the unscaled version of A...
Store parameters and functions associated to the unscaled version of A...
Store parameters and functions associated to the unscaled version of A...
Store parameters and functions associated to the unscaled version of A...
Implements the differential equations associated to different versions of Allometric Trophic Models (ATN) to estimate the temporal dynamics of species biomasses in food webs. It offers several features to generate synthetic food webs and to parametrise models as well as a wrapper to the ODE solver deSolve.