Ac3net.getDirectedOrDualLinks function

Find the unique directed or dual links in the network.

Ac3net.getDirectedOrDualLinks takes a network list matrix and returns a unique network; either directionals or the duals.

Ac3net.getDirectedOrDualLinks(net1, dual_=FALSE)

Arguments

• net1: A matrix that represents the links between two variables at each row. Namely, the element at row i and column 1 and the element at row i and column 2 are assumed to be paired or linked. There is no connection assumed among rows.
• dual_: It is FALSE by default, which means there is directionality assumed from column 1 to column 2 at each matrices. A--B and B--A is cases filtered out. If TRUE, then only the dual pairs selected.

Details

Ac3net.getDirectedOrDualLinks takes a network list matrix and returns a unique network; either directionals or the duals. If directed=TRUE then it is the unique pairs from column 1 to column 2. If directed=FALSE then it is the unique dual pairs (selects if and only if A--B and B--A exist). directional or undirectional common pairs between the two regarding the first two columns of the networks.

Returns

Ac3net.getDirectedOrDualLinks returns a unique network matrix.

References

G. Altay,"Directed Conservative Causal Core Gene Networks", bioRxiv, 2018. G. Altay, F. Emmert-Streib, "Inferring the conservative causal core of gene regulatory networks", BMC Systems Biology (2010) 4:132.

Author(s)

Gokmen Altay

See Also

Ac3net.maxmim, Ac3net.cutoff,

Examples

# net1
# net <-  Ac3net.getDirectedOrDualLinks(net1, dual_=FALSE)