Prediction of Antimicrobial Peptides
Prediction of antimicrobial peptides
AmpGram Graphical User Interface
Get putative antimicrobial peptides
Install AmpGramModel package containing model for AMP prediction
Convert predictions to data.frame Return predictions as data.frame
Predict antimicrobial peptides
Read sequences from .txt file
Predicts antimicrobial peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI. The AmpGram model is too large for CRAN and it has to be downloaded separately from the repository: <https://github.com/michbur/AmpGramModel>.