AnimalSequences0.2.0 package

Calculate Association Metrics for Sequences

Calculate the Average Length of Sequences

Calculate Conditional Entropy of B given A in Bits

Calculate Distance Matrix from Co-occurrence Matrix

Calculate Transition Counts from Sequences

Calculate Transition Probabilities from Sequences

Cluster Elements Using Hierarchical Clustering

Compare True and Shuffled Distinct Elements per List Item

Calculate Co-occurrence Matrix for Sequences

Count Distinct Elements per List Item in Shuffled Sequences

Count Distinct Elements per List Item

Count Distinct Elements in Sequences

Plot the network of elements and covariates based on the long format o...

Calculate Element-Covariate Conditional Probabilities

Calculate Individual Element Durations

Calculate Median Position of Each Element in Sequences

Find Most Similar Columns in a Distance Matrix

Generate a Sequence of Elements

Convert Long Format to Sequences

Calculate the Median Length of Sequences

Create a Menzerath-Altmann Plot

Calculate the Minimum and Maximum Length of Sequences

Perform Various Clustering Methods

Plot the Distribution of Sequence Lengths

Calculate Observed and Expected Redundancy of Sequences

Calculate the Standard Deviation of Sequence Lengths

Summarize Sequence Durations

Summarize Sequence Lengths by Covariate

Summarize Sequence Lengths by Element

Summarize Sequence Lengths

Convert Sequences to Long Format

Shuffle Elements Across All Sequences

Shuffle Elements Within Each Sequence

Temporal Overlap

Perform a Chi-Squared Test for Transition Counts

Calculate Transition Entropy for Sequences

Transition Predictions

Perform a Statistical Test for Transition Probabilities

Create a Zipf's Law Plot