compute_feature_pvalues function

Compute feature level p-values from BEAM statistics

compute_feature_pvalues(beam.stats)

Arguments

• beam.stats: A beam.stats object, which is a list with beam.stats (the association matrices), the beam.specs, and the beam.data

Returns

A list of feature level p-values, with each entry a data frame for a different omics/endpoint associaiton, with columns id, gene, beta, p, q

Examples

data(beam_stats)
test.feat.pvals <- compute_feature_pvalues(beam.stats=beam_stats)