compute_set_pvalues function

Compute BEAMR p-values for sets

compute_set_pvalues(
  beam.stats,
  peel = FALSE,
  z = TRUE,
  alpha = 0.1,
  mess.freq = 25
)

Arguments

• beam.stats: A beam.stats object from compute_beam_stats function
• peel: Logical indicating whether to peel in p-value calculation
• z: Logical indicating whether to z-scale each vector of one coefficient estimate across bootstraps before analysis
• alpha: Maximum depth to peel (reduces computing time); default 0.1.
• mess.freq: Message frequency; default 25.

Returns

A list with a data.frame of set p-values from BEAMR analysis, a data.frame of summary row p-values, and a data frame of set matching.

Examples

data(beam_stats_sm)
test.pvals <- compute_set_pvalues(beam.stats=beam_stats_sm)