prep_beam_data function

Prepare data for BEAM analysis

prep_beam_data(
  main.data,
  mtx.data,
  mtx.anns = NULL,
  set.data = NULL,
  set.anns = NULL,
  n.boot = 1000,
  seed = NULL
)

Arguments

• main.data: A data.frame
• mtx.data: A list, each element is a matrix
• mtx.anns: A list, each element is a data.frame
• set.data: A data.frame with columns set.id, mtx.id, row.id
• set.anns: A data frame with set.id and other columns
• n.boot: Number of bootstraps
• seed: Initial seed for random number generation

Returns

A beam.data object, which is a list with main.data, mtx.data, mtx.anns, anns.mtch, set.data, set.anns, and boot.index

Examples

data(clinf)
data(omicdat)
data(omicann)
data(setdat)
test.beam.data <- prep_beam_data(main.data=clinf, mtx.data=omicdat,
                                 mtx.anns=omicann, set.data=setdat,
                                 set.anns=NULL, n.boot=10, seed=123)