BOP2FE1.0.3 package

Bayesian Optimal Phase II Design with Futility and Efficacy Stopping Boundaries

BOP2FE_binary

BOP2-FE design for binary endpoint

BOP2FE_coprimary

BOP2-FE design for co-primary endpoint

BOP2FE_jointefftox

BOP2-FE design for joint efficacy and toxicity endpoint

BOP2FE_nested

BOP2-FE design for nested (ordinal) endpoint

get_boundary_binary

Boundary values for binary Endpoint

get_boundary_coprimary

Boundary values for co-primary Endpoint

get_boundary_jointefftox

Boundary values for joint Endpoint

get_boundary_nested

Boundary values for Nested Endpoint

get_boundary_oc_binary

Computes both the boundary and corresponding operating characteristics...

get_boundary_oc_coprimary

Computes both the boundary and corresponding operating characteristics...

get_boundary_oc_efftox

Computes both the boundary and corresponding operating characteristics...

get_boundary_oc_nested

Computes both the boundary and corresponding operating characteristics...

get_cf_cs_values

Compute Probability Cutoffs for Futility and efficacy Stopping

get_oc_binary

Operating characteristics for binary Endpoint

get_oc_coprimary

Operating characteristics for for coprimary Endpoint

get_oc_jointefftox

Operating characteristics for for joint Endpoint

get_oc_nested

Operating characteristics for Nested Endpoint

plot.bop2fe

Plot the cut-off probability and simulation results for BOP2FE designs

search_optimal_pars_binary

Search optimal parameters for binary endpoint

search_optimal_pars_coprimary

Search optimal parameters for co primary endpoint

search_optimal_pars_efftox

Search optimal parameters for joint efficacy and toxicity endpoint

search_optimal_pars_nested

Search optimal parameters for nested endpoint

simulate_oc

Compute operating characteristics at the optimal boundary

summary.bop2fe

summarize main results for a given BOP2FE designs

Bayesian optimal design with futility and efficacy stopping boundaries (BOP2-FE) is a novel statistical framework for single-arm Phase II clinical trials. It enables early termination for efficacy when interim data are promising, while explicitly controlling Type I and Type II error rates. The design supports a variety of endpoint structures, including single binary endpoints, nested endpoints, co-primary endpoints, and joint monitoring of efficacy and toxicity. The package provides tools for enumerating stopping boundaries prior to trial initiation and for conducting simulation studies to evaluate the design’s operating characteristics. Users can flexibly specify design parameters to suit their specific applications. For methodological details, refer to Xu et al. (2025) <doi:10.1080/10543406.2025.2558142>.

  • Maintainer: Belay Birlie Yimer
  • License: MIT + file LICENSE
  • Last published: 2025-09-29