BeeBDC1.3.1 package

Download occurrence data from the Atlas of Living Australia (ALA)

Query the bee taxonomy and country checklist

Download a country-level checklist of bees from Discover Life

Download a nearly complete taxonomy of bees globally

Parallel estimation of species richness in a community using iChao

Build a chord diagram of duplicate occurrence links

Sets up column names and types

Flag continent-level outliers with a provided checklist.

Flag occurrences with an uncertainty threshold

Match and harmonise country names

Fix country name issues using a user-input list

Flag country-level outliers with a provided checklist.

Build a table of data providers for bee occurrence records

Simple function to save occurrence AND EML data as a list

Find dates in other columns

Find fill-down errors

Set up global directory paths and create folders

Create a compound bar graph of duplicate data sources

Identifies duplicate occurrence records

Finds files within a directory

Flags occurrences that are marked as absent

Flag license protected records

Loads, appends, and saves occurrence flag data

Build a per-species summary for each and all flags

Combine the formatted USGS data with the main dataset

Flags records with GBIF issues

ggplot2 extension for a Chao- and iNEXT-wrapper outputs

Harmonise taxonomy of occurrence data

Attempt to match database_ids from a prior run

Imports the most-recent repoMerge data

Parallel estimation of species richness in a community using iNEXT

Creates interactive html maps for species

Get country names from coordinates

Flags coordinates that are inconsistent with the stated country name

Flags coordinates for imprecision

Identify transposed geographic coordinates

Create figures reporting the results of the bdc/BeeBDC packages

Wraps jbd_coordinates_transposed to identify and fix transposed occurr...

Finds outliers, and their duplicates, as determined by experts

Integrate manually-cleaned data from Paige Chesshire

Generate a plot summarising flagged data

A wrapper for all of the data readr_functions

Find GBIF, ALA, iDigBio, and SCAN files in a directory

Import occurrences from GBIF, ALA, iDigBio, and SCAN downloads

Estimate country, continental, and global species richnesses

Prepare occurrence, taxonomy, and checklist data for richness estimati...

Create or update the .summary flag column

Create country-level summary maps of species and occurrence numbers

Import and convert taxadb taxonomies to BeeBDC format

Find, import, and format USGS data to Darwin Core