General Unified Threshold Model of Survival for Bees using Bayesian Inference
'BeeGUTS' package; a package to perform GUTS modelling for Bee experim...
Recalculate the concentrations for the acute contact tests for bees
Recalculate concentration for the acute oral tests for bees
Recalculate the concentrations for the chronic oral tests for bees fro...
Plotting of correlation plots for beeSurvFit objects
Computes PPC and NRMSE as defined in EFSA 2018
Read and format the data for the BeeGUTS model
Fit a GUTS model for bees survival analysis using Bayesian Inference (...
Predict the Lethal Concentration at which of organisms die for a...
Predict the Lethal Concentration method at which of organisms di...
Plotting method for beeSurvData objects
Plotting method for beeSurvFit objects
Plotting method for beeSurvPred objects
Plotting method for beeSurvValidation objects
Plotting method for ppc objects
Posterior predictive check method for beeSurvFit objects
Posterior predictive check method for beeSurvValidation objects
Generates an object to be used in posterior predictive check for `beeS...
Predict method for beeSurvFit objects
Predict method for beeSurvFit objects
Plotting of prior and posterior plots for beeSurvFit objects
Calculate the presence of Time Reinforced Toxicity for the compound fr...
Perform comparison between LLD50 at 2 days and at 10 days as for EFSA ...
Summary of beeSurvFit objects
Summary of LCx objects
Plotting method for traces and densities for beeSurvFit objects
Calculate the presence of Time Reinforced Toxicity for the compound fr...
Perform the extrapolation of the LDD50 to 27 days and check the presen...
Validate method for beeSurvFit objects
Validation method for beeSurvFit objects
Tools to calibrate, validate, and make predictions with the General Unified Threshold model of Survival adapted for Bee species. The model is presented in the publication from Baas, J., Goussen, B., Miles, M., Preuss, T.G., Roessing, I. (2022) <doi:10.1002/etc.5423> and Baas, J., Goussen, B., Taenzler, V., Roeben, V., Miles, M., Preuss, T.G., van den Berg, S., Roessink, I. (2024) <doi:10.1002/etc.5871>, and is based on the GUTS framework Jager, T., Albert, C., Preuss, T.G. and Ashauer, R. (2011) <doi:10.1021/es103092a>. The authors are grateful to Bayer A.G. for its financial support.
Useful links