Bayesian Inference and Model Selection for Stochastic Epidemics
Distribution of the time between infection and death
Bar plot of the age distribution
Contact matrix heatmap
Country-specific age distribution
Aggregate the age distribution matrix
Aggregate a contact matrix
Aggregate the Infection Fatality Ratio
Bayesian inference and model selection for stochastic epidemics
Country-specific contact matrix
Names of countries with an available age distribution
Names of countries for which a contact matrix is available
Plot the posterior contact matrix
Plot the posterior distribution of the infection counts
Plot the posterior distribution of the mortality counts
Plot the estimated effective reproduction number trajectory
Plot the estimated age-specific transmission rate
Summarize the posterior distribution of the infection counts
Summarize the posterior distribution of the mortality counts
Estimate the effective reproduction number with the next generation ma...
Estimate the age-specific transmission rate
Prior distributions and options
Bayesian diffusion-driven multi-type epidemic models via Stan
Summary of stanigbm posterior output
Bayesian analysis for stochastic extensions of non-linear dynamic systems using advanced computational algorithms. Described in Bouranis, L., Demiris, N., Kalogeropoulos, K., and Ntzoufras, I. (2022) <arXiv:2211.15229>.