R Wrapper for Java Implementation of BiBit
The BiBit Algorithm
Column Extension Procedure
The BiBit Algorithm with Noise Allowance
The BiBit Algorithm with Noise Allowance guided by Provided Patterns.
Extract BC from bibit3 result and add pattern
A biclustering algorithm for extracting bit-patterns from binary datas...
BiBit Workflow
Row Coverage Plots
Column Info of Biclusters
Barplots of Column Noise for Biclusters
Compare Biclustering Results using Jaccard Index
Transform R matrix object to BiBit input files.
Finding Maximum Size Biclusters
Noise Scree Plots
Apply Fisher Exact Test on Bicluster Rows
Summary Method for Biclust Class
Update a Biclust or BiBitWorkflow Object with a new Noise Level
A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <DOI:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.