BoolNet2.1.9 package

Visualize the transitions in a probabilistic Boolean network

Plot a sequence of states

Visualize state transitions and attractor basins

Print attractor cycles

Print a Boolean network

Print the results of a Markov chain simulation

Print a probabilistic Boolean network

Print simulation results

Print a transition table

Reconstruct a Boolean network from time series of measurements

Save a network

Create LaTeX table of state sequences

Create LaTeX state table of attractors

Binarize a set of real-valued time series

Extract a single Boolean network from a probabilistic Boolean network

Simulate knocked-out or over-expressed genes

Generate a random N-K Boolean network

Generate a state vector from single gene values

Generate time series from a network

Generation functions for biologically relevant function classes

Identify attractors in a Boolean network

Decode the state sequence of a synchronous attractor

Get states in basin of attraction

Get state transitions between a state and its attractor

Retrieve summary information on a state

Get a matrix of transitions and their probabilities in probabilistic B...

Retrieve the transition table of a network

Import a network from BioTapestry

Load a Boolean network from a file

Load an SBML document

Identify important states in probabilistic Boolean networks

Perturb a Boolean network randomly

Perturb the state trajectories and calculate robustness measures

Plot state tables or transition graphs of attractors

Plot the wiring of a Boolean network

Simplify the functions of a synchronous, asynchronous, or probabilisti...

Simulate a symbolic Boolean network

Perform a transition to the next state

Convert a symbolic network into a truth table representation

Test properties of networks by comparing them to random networks

Export a network to the Pajek file format

Export a network to SBML

Convert a network in truth table representation into a symbolic repres...