Cross-Species Analysis of Cell Identities, Markers and Regulations
CACIMAR colors palette
Format marker genes for plotting
plot the heatmap of marker genes across different species
Identify cell type of each cluster
Identify conserved cell types based on power of genes and orthologs da...
Identify orthologs marker genes for two species
Identify conserved regulatory networks
Identify markers of each cluster
Plot Markers in each cell type
A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.