Coupled Hidden Markov Models
Backward step
Perform exact inference of coupled hidden markov models.
Perform variational inference of coupled Hidden Markov Models.
Summarize the results of the coupled HMM.
Perform inference of coupled hidden markov models.
Emis.Gauss
Emis.LRR
EmisGb.Gauss
Wl Internal function calculating Wl.
Forward step
Initialization step of the CHMM_EM function.
Initialization step of the CHMM_VEM function.
Toy example - observations for 5 correlated samples.
Toy example - status for 5 correlated samples.
Implementation of the Viterbi algorithm
Wl Internal function calculating Wl.
An exact and a variational inference for coupled Hidden Markov Models applied to the joint detection of copy number variations.