Genomic Prediction Using SNP Codata
tools:::Rd_package_title("CodataGS")
Computes genomic relationship matrix
Computes models for the variance components
Performs genomic prediction based on SNP codata.
Transforms hat values
Mixed model equations
Scales the genotype matrix.
Summary method for CodataGS objects
Transforms hat values
Computes genomic breeding values using external information on the markers. The package fits a linear mixed model with heteroscedastic random effects, where the random effect variance is fitted using a linear predictor and a log link. The method is described in Mouresan, Selle and Ronnegard (2019) <doi:10.1101/636746>.