Cohort Generation for the OMOP Common Data Model
Add cohort subset definition to a cohort definition set
Add Cohort template definition to cohort set
Add exclude on index subset definition
Add Indication Subset Definition
Add Restriction Subset Definition
Add an sql cohort definition
Add union cohort definition to cohort definition set
Check if a cohort definition set is using the proper data types
CohortGenerator: Cohort Generation for the OMOP Common Data Model
Cohort Subset Definition
Cohort Subset Operator
Class for automating the creation of bulk cohorts
Computes the checksum for a value
Create ATC Cohort Template Definition
Create Cohort Subset Operator
Create Subset Definition
A definition of subset functions to be applied to a set of cohorts
Create cohort tables
Create Cohort Template Definition
Create Demographic Subset Operator
Create createDemographicSubset Subset operator
Create an empty cohort definition set
Create an empty negative control outcome cohort set
Create Limit Subset Operator
Create Limit Subset Operator
Create the results data model tables on a database server.
Create Rx Norm Cohort Template Definition
Create SNOMED Cohort Template Definition
Create a relative time window for cohort subset operations
Create cohort template to union multiple cohorts
Demographic Subset Operator
Drop cohort statistics tables
Export the cohort statistics tables to the file system
Generate a set of cohorts
Generate a set of negative control outcome cohorts
Count the cohort(s)
Get a cohort definition set
Get Cohort Inclusion Rules from a cohort definition set
Get Cohort Inclusion Stats Table Data
Used to get a list of cohort table names to use when creating the coho...
Validate cohort
Get database migrations instance
Get Exclude On Index Subset Definition Ids
Get Indication Subset Definition Ids
Get last generated cohort checksums
Get Restriction Subset Definition Ids
Get specifications for CohortGenerator results data model
Get cohort subset definitions from a cohort definition set
Extract template definitions from a cohort definition set
Used to insert the inclusion rule names from a cohort definition set w...
Used to check if a string is in lower camel case
Is the data.frame a cohort definition set?
Is the data.frame formatted for uploading to a database?
Used to check if a string is in snake case
Limit Subset Operator
Migrate Data model
Used to read a .csv file
Run a cohort generation and export results
Sample Cohort Definition Set
Save the cohort definition set to the file system
Save cohort subset definitions to json
Time Window For Cohort Subset Operator
Abstract base class for subsets.
Upload results to the database server.
Used to write a .csv file
Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Useful links