Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)
Calculate the mutation detection rate using different assays
Detection of co-occurring mutations using double-assay information
Global mutational events profiling of proteins
Global single nucleotide polymorphism (SNP) profiling in virus genome
Provide effects of each single nucleotide polymorphism (SNP), insertio...
Bacth assay analysis for last five Nr of primers
Merge neighboring events of single nucleotide polymorphism (SNP), inse...
Plot mutation counts for certain genes
Plot mutation statistics for nucleiotide
Preprocess "nucmer" object to add group information
Plot the mutation statistics after annotating the "nucmer" object by "...
Plot the most frequent mutational events for proteins in the SARS-CoV-...
A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.
Useful links