plotSimulation function

Plotting Data Simulated Under A Random-Effects Mixture Model

Function plotSimulation displays sample means of data simulated under a random-effects mixture model. Each plot corresponds to a cluster. May need to partition the plotting area to display all in one plot.

plotSimulation(simudata, times = 1:ntime, nsize, 
    ntime = length(times), nrep, skip = 0, ...)

Arguments

• simudata: List produced by simuDataREM. Contains simulated data.
• times: Vector of length ntime indicating at which time points data are simulated.
• nsize: An integer vector containing sizes of simulated clusters.
• ntime: Number of time points.
• nrep: Number of replicates.
• skip: Not for use.
• ...: Addition arguments for plot.

Returns

None.

References

Fu, A. Q., Russell, S., Bray, S. and Tavare, S. (2013) Bayesian clustering of replicated time-course gene expression data with weak signals. The Annals of Applied Statistics. 7(3) 1334-1361.

Author(s)

Audrey Q. Fu

See Also

simuDataREM for simulating data.

outputData for writing simulated data and parameter values used in simulation into external files.

DIRECT for clustering the data.

Examples

## See example for simuDataREM.