Dynamical Systems Approach to Immune Response Modeling
A function that checks if a call to simulation function worked
DSAIRM: A package to learn about Dynamical Systems Approaches to Immun...
The main menu for the DSAIRM package
A helper function which processes and displays the documentation part ...
A helper function that produces a call to a simulator function for spe...
A helper function that takes simulation results and produces ggplot pl...
A function to parse modelsettings for simulation runs
A helper function that takes simulation results and produces plotly pl...
A helper function that takes a model and generates shiny UI elements
A helper function that takes result from the simulators and produces t...
A function that runs an app for specific settings and processes result...
Acute Virus Infection and IR Model
Fitting a simple bacteria infection models to Streptococcus pneumoniae...
Basic Bacteria model - discrete
Simulation to illustrate parameter scan of the basic bacteria model #'
Basic Bacteria model - ODE
Fitting a simple viral infection models to influenza data
Simulation to illustrate parameter scan of the basic virus model #'
Basic Virus Model
Basic Virus Model
Chronic Virus Infection and IR Model
Fit a simple viral infection model and compute confidence intervals
Stochastic simulation of a compartmental acute virus infection model w...
Extended Bacteria model - ODE
Fitting a simple viral infection model with 2 types of drug mechanisms...
Fitting 2 simple viral infection models to influenza data
Simulation of a viral infection model with immune response The simulat...
PkPd Virus model
Simulation to illustrate uncertainty and sensitivity analysis
Simulation of a viral infection model with an immune response
Simulation of a basic viral infection model with drug treatment
Simulation models (apps) of various within-host immune response scenarios. The purpose of the package is to help individuals learn about within-host infection and immune response modeling from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.
Useful links