Dependency Logo
DNA alphabet with gaps
DNA alphabet
Amino acid alphabet with gaps
Amino acid alphabet
built alphabet
RNA alphabet with gaps
RNA alphabet
Plots a colorchart representation of a set of sequences
Rectangles of averaged colors
Create DLData object
Filters columns (sequence positions) by conservation
Filters columns (sequence positions) by dependency
Filters columns (sequence positions) by gaps
Filters data columns by some filter function
Compute dependencies between positions
Position weight matrix from DLData object
Sequence logo
Paritions data by most inter-dependent positions
Plots blocks of data
Plots a graph representation of dependency values
Plot a dependency logo
Plots a matrix representation of dependency values
Replaces colors in DLData object
Reverse complement
Plots weights as boxplots
Plots weights as lines
Suggests colors for symbols
Summarizing DLData objects
Plots dependency logos from a set of aligned input sequences.