Differential Pattern Analysis via Linear Modeling
Determine p-values based on permutation test results
Generate a blank plot window
Fit linear models to time-course expression patterns using the limma p...
Calculate module membership (kME) for all genes in a time-course data ...
DiPALM - Differential Pattern Analysis via Linear Modeling
Plot multiple density distributions
Plot multiple time-course expression patterns for one gene
Plot multiple averaged time-course expression patterns for a group of ...
Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.