Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model
Add a variable indicating individuals medications
Run benchmark of drug utilisation cohort generation
Helper for consistent documentation of cdm.
Helper for consistent documentation of censorDate.
Helper for consistent documentation of cohort.
Get the gapEra used to create a cohort
Helper for consistent documentation of cohortId.
Helper for consistent documentation of name for computed tables.
Helper for consistent documentation of conceptSet.
Helper for consistent documentation of daysPrescribed.
DrugUtilisation: Summarise Patient-Level Drug Utilisation in Data Mapp...
Restrict cohort to only the first cohort record per subject
To add a new column with the cumulative dose. To add multiple columns ...
To add a new column with the cumulative quantity. To add multiple colu...
To add a new column with the days exposed. To add multiple columns use...
To add a new column with the days prescribed. To add multiple columns ...
Add drug restart information as a column per follow-up period of inter...
Add new columns with drug use related information
Add a variable indicating individuals indications
To add a new column with the initial daily dose. To add multiple colum...
To add a new column with the duration of the first exposure. To add mu...
To add a new column with the initial quantity. To add multiple columns...
To add a new column with the number of eras. To add multiple columns u...
To add a new column with the number of exposures. To add multiple colu...
To add a new column with the time to exposure. To add multiple columns...
Helper for consistent documentation of add/`summariseDrugUtilisation...
Erafy a cohort_table collapsing records separated gapEra days or less.
Helper for consistent documentation of gapEra.
Generate a set of drug cohorts based on ATC classification
Generate a set of drug cohorts based on given concepts
Restrict cohort to only cohort records within a certain date range
Generate a set of drug cohorts based on drug ingredients
Helper for consistent documentation of indexDate.
Helper for consistent documentation of ingredientConceptId.
It creates a mock database for testing DrugUtilisation package
Helper for consistent documentation of nameStyle.
Helper for consistent documentation of name for new cohorts.
Helper for consistent documentation of numberExposures.
Function to create a tibble with the patterns from current drug streng...
Helper for consistent documentation of plot.
Generate a custom ggplot2 from a summarised_result object generated wi...
Generate a custom ggplot2 from a summarised_result object generated wi...
Plot the results of summariseDrugUtilisation
Generate a plot visualisation (ggplot2) from the output of summariseIn...
Plot proportion of patients covered
Objects exported from other packages
Restrict cohort to only cohort records with the given amount of prior ...
Restrict cohort to only cohort records with a given amount of time sin...
Helper for consistent documentation of restrictIncident.
Helper for consistent documentation of result.
Helper for consistent documentation of strata.
Check coverage of daily dose computation in a sample of the cdm for se...
Summarise the drug restart for each follow-up period of interest.
This function is used to summarise the dose utilisation table over mul...
Summarise the indications of individuals in a drug cohort
Summarise proportion Of patients covered
This function is used to summarise treatments received
Helper for consistent documentation of table.
Format a dose_coverage object into a visual table.
Format a drug_restart object into a visual table.
Format a drug_utilisation object into a visual table.
Create a table showing indication results
Create a table with proportion of patients covered results
Format a summarised_treatment result into a visual table.
Summarise patient-level drug utilisation cohorts using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. New users and prevalent users cohorts can be generated and their characteristics, indication and drug use summarised.
Useful links