Dysregulated Pathway Identification Analysis
calcDyspiaStat: Calculates DysPIA statistics
Calculates DysPIA statistic values for all the prefixes of a gene pair...
Calculates DysPIA statistic values for the gene pair sets
calEdgeCorScore_ESE
DysGPS: Calculates Dysregulated gene pair score (DysGPS) for each gene...
DysPIA: Dysregulated Pathway Identification Analysis
DyspiaSig
DyspiaSimpleImpl
setUpBPPARAM
It is used to identify dysregulated pathways based on a pre-ranked gene pair list. A fast algorithm is used to make the computation really fast. The data in package 'DysPIAData' is needed.