EHR0.4-11 package

Add Lastdose Data

Statistical Analysis for PheWAS

Internal functions for buildDose process

PK oral functions

Combine Dose Data

Internal functions for collapseDose process

Collapse Dose Data

Data Transformation

dd.baseline

dd.baseline.small

dd

dd.small

Electronic Health Record (EHR) Data Processing and Analysis Tool

Internal functions for Extract-Med module

Extract medication information from clinical notes

Convert Character Frequency to Numeric

Create ID Crosswalk

Internal functions for lastdose

Firth's penalized-likelihood logistic regression with more decimal pla...

Make Dose Data

Internal functions for EHR modules

Internal functions for parse process

Parse CLAMP NLP Output

Parse MedEx NLP Output

Parse medExtractR NLP Output

Parse MedXN NLP Output

Internal functions for pk analysis

Process and standardize extracted last dose times

Pull Fake/Mod ID

Pull Real ID

Read and Transform

Build-PK-IV Module

Build-PK-Oral Module

Run Demographic Data

Run Drug Level Data

Run Lab Data

Run Str Data I

Run Structured E-Prescription Data

Standardize Dose Entity

Standardize Dose Change Entity

Standardize Dose Schedule Entity

Standardize Duration Entity

Standardize Frequency Entity

Standardize Route Entity

Standardize Strength Entity

Write Check File as CSV

Make Zero One Contingency Tables