nonIntrinsic_mean_tube function

Compute Non-Intrinsic Mean of ETReps

Calculates the non-intrinsic mean of a set of ETReps. This method utilizes a non-intrinsic distance metric based on robotic arm non-intrinsic transformations.

nonIntrinsic_mean_tube(tubes, type = "sizeAndShapeAnalysis", plotting = TRUE)

Arguments

• tubes: List of ETReps.
• type: String, "ShapeAnalysis" or "sizeAndShapeAnalysis" (default is "sizeAndShapeAnalysis").
• plotting: Logical, enables visualization of the mean (default is TRUE).

Returns

List representing the mean ETRep.

Examples

#Example 1
# Load tubes
data("tube_A")
data("tube_B")
nonIntrinsic_mean<-
  nonIntrinsic_mean_tube(tubes = list(tube_A,tube_B),
                         plotting = FALSE)
# Plotting
plot_Elliptical_Tube(tube = nonIntrinsic_mean,
                     plot_frames = FALSE,
                     plot_skeletal_sheet = FALSE,
                     plot_r_project = FALSE,
                     plot_r_max = FALSE,
                     add = FALSE)

#Example 2
data("simulatedColons")
nonIntrinsic_mean<-
  nonIntrinsic_mean_tube(tubes = simulatedColons,
                         plotting = FALSE)
# Plotting
plot_Elliptical_Tube(tube = nonIntrinsic_mean,
                     plot_frames = FALSE,
                     plot_skeletal_sheet = FALSE,
                     plot_r_project = FALSE,
                     plot_r_max = FALSE,
                     add = FALSE)