EpiDynamics0.3.1 package

Dynamic Models in Epidemiology

EpiDynamics-package

The EpiDynamics Package

MultiStrainPartialImmunity

Partial immunity model that cycles (P 4.2).

PlotMods

Plot results of capm model functions

SEIR

SEIR model (2.6).

SEIR4AgeClasses

SEIR model with 4 age classes and yearly aging (P 3.4).

SEIRnStages

SEIR model with n stages (P 3.5).

SIR

Simple SIR model (P 2.1).

sir2AgeClasses

SIR model with 2 age classes (P 3.3).

SIR2Stages

SIR model with 2 age classes (P 3.3).

SIR2TypesImports

SIR model with two types of imports (P 6.6).

SIRAdditiveNoise

SIR model with constant additive noise (P 6.1).

SIRBirthDeath

SIR model with births and deaths (P 2.2).

SIRCarrierState

SIR model with carrier state (2.7).

SIRDemogStoch

SIR model with demographic stochasticity (P 6.4).

SIRInducedMortality

SIR model with disease induced mortality: Density-dependent transmissi...

SIRInducedMortality2

SIR model with disease induced mortality: frequency-dependent transmis...

SIRPartialImmunity

SIR model with partial immunity (P 4.1).

SIRScaledAdditiveNoise

SIR model with Scaled additive noise (P 6.2).

SIRSinusoidalBirth

SIR model with sinusoidal births (P 5.3).

SIRSinusoidalForcing

SIR model with sinusoidal forcing (P 5.1).

SIRTauLeap

SIR model with tau leap method (P 6.5).

SIRTermTimeForcing

SIR model with corrected term-time forcing (P 5.2).

SIRVector

SIR model for mosquito vectors (P 4.4).

SIS

Simple SIS model (P 2.5).

SIS2RiskGroups

SIS model with 2 risk groups (P 3.1).

SISDemogStoch

SIS model with demographic stochasticity (P 6.3).

SISinusoidalTransmBrith

Rabbit Hemorrhagic Disease model with sinusoidal transmission rate and...

SISnRiskGroups

SIS model with multiple risk groups (P 3.2).

SISPairwiseApprox

Pairwise SIS approximation model (P 7.8).

Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.