EstimateR function

Function to ensure compatibility with EpiEstim versions <2.0

Please only use for compatibility; Prefer the new estimate_R function instead

EstimateR(
  I,
  T.Start,
  T.End,
  method = c("NonParametricSI", "ParametricSI", "UncertainSI"),
  n1 = NULL,
  n2 = NULL,
  Mean.SI = NULL,
  Std.SI = NULL,
  Std.Mean.SI = NULL,
  Min.Mean.SI = NULL,
  Max.Mean.SI = NULL,
  Std.Std.SI = NULL,
  Min.Std.SI = NULL,
  Max.Std.SI = NULL,
  SI.Distr = NULL,
  Mean.Prior = 5,
  Std.Prior = 5,
  CV.Posterior = 0.3,
  plot = FALSE,
  leg.pos = "topright"
)

Arguments

• I: see incid in estimate_R
• T.Start: see config$t_start in estimate_R
• T.End: see config$t_end in estimate_R
• method: see method in estimate_R (but EstimateR uses CamelCase where estimate_R uses snake_case for the method names)
• n1: see n1 in estimate_R
• n2: see n2 in estimate_R
• Mean.SI: see config$mean_si in estimate_R
• Std.SI: see config$std_si in estimate_R
• Std.Mean.SI: see config$std_mean_si in estimate_R
• Min.Mean.SI: see config$min_mean_si in estimate_R
• Max.Mean.SI: see config$max_mean_si in estimate_R
• Std.Std.SI: see config$std_std_si in estimate_R
• Min.Std.SI: see config$min_std_si in estimate_R
• Max.Std.SI: see config$max_std_si in estimate_R
• SI.Distr: see config$si_distr in estimate_R
• Mean.Prior: see config$mean_prior in estimate_R
• Std.Prior: see config$std_prior in estimate_R
• CV.Posterior: see config$cv_posterior in estimate_R
• plot: Not used anymore, only there for compatibility
• leg.pos: Not used anymore, only there for compatibility