A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters
Plot the epidemic curve
Simulation of an incidence time series
Estimation of the incubation density based on coarse data
Estimation of the reproduction number with Laplacian-P-splines
Estimation of the reproduction number with Laplacian-P-splines via MCM...
Histogram smoothing with Laplacian-P-splines
Density function and discrete distribution for a disease interval
Simulation of incubation times
Nowcasting and estimation of occurred but not yet reported events
Nowcasting the reproduction number
Routine to measure the performance of estimR and estimRmcmc
Plot the interval distribution from an Idist object
Plot the estimated incubation distribution
Plot of nowcasted cases and delay distribution
Plot the estimated reproduction number
Plot the nowcasted reproduction number
Prior specification for model hyperparameters
Summarize the estimated reproduction number
Estimation of epidemiological parameters with Laplacian-P-splines following the methodology of Gressani et al. (2022) <doi:10.1371/journal.pcbi.1010618>.