calc_1d function

Return mixture estimation of a normal and a tumor Takes BAF, LRR, chr, x, gt, seg_raw

calc_1d(BAF, LRR, chr, x, GT, seg_raw)

Arguments

• BAF: vector containing B allen frequency (BAF)
• LRR: vector
• chr: vector
• x: vector
• GT: vector of factors containing genotype
• seg_raw: dataframe about segmentation

Returns

• sol1: percentage of tumor for optimal solution 1 - sol2: percentage of tumor 1 for optimal solution 2