Non-Additive Expression Analysis of Hybrid Offspring
Plot the base frequency distribution diagram for small RNA (sRNA)
Filtering out lowly expressed genes based on count
Non-additive expression analysis
Non-additive expression analysis
Get the results of differential expression analysis.
Plot the length distribution diagram for small RNAs (sRNAs)
Base frequency distribution of small RNA (sRNA)
Make a Triangle Diagram
Filtering out lowly expressed genes based on RPM
Length distribution of small RNAs (sRNAs)
Get the details of the Venn Diagram
Make a three-set Venn Diagram
Three functional modules, including genetic features, differential expression analysis and non-additive expression analysis were integrated into the package. And the package is suitable for RNA-seq and small RNA sequencing data. Besides, two methods of non-additive expression analysis were provided. One is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the gene in hybrid offspring with the expression level in parents. For non-additive expression analysis of RNA-seq data, it is only applicable to hybrid offspring (including two sub-genomes) species for the time being.