Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
Remove designated markers from a GENEPOP file.
tools:::Rd_package_title("FinePop2")
Genome-wide global FST (Weir & Cockerham 1984).
Generalized least squres for regression analysis considering auto corr...
Locus-specific global FST (Kitada et al. 2007, 2017).
Genome-wide poppulation-paiwise FST (Nei & Chesser 1983).
Genome-wide population-specific FST (Weir & Goudet 2017).
Create a genotype data object of populations from a GENEPOP format fil...
Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) <doi:10.1101/2020.01.30.927186>.