Genealogical Data Analysis
Genealogy subset
Get id numbers of children
Internal function used by gen.findMRCA
Completeness
Variance of completeness index
Genealogy depth
Inbreeding coefficient
Average inbreeding coefficient confidence interval
Finds the minimum distances between pairs of individuals given a set o...
Minimum genetic distance between two individuals
Find common founder ancestors
Finding most recent common ancestors, MRCAs
Get founder id numbers
Genetic contribution of ancestors
Create object of class GLgen
Create pedigree data
Internal function used by gen.findMRCA
Internal function used by gen.findFounders
Pedigree graphical tool
Get half-founder id numbers
Genealogical implex
Variance of genealogical implex
Create object of class GLgen for maternal or paternal lineages
Maximum number of generations
Mean number of generations
Expected Genealogical Depth
Variance of genealogical depth
Minimum number of generations
Number of children
Number of individuals
Number of men
Number of women
Ancestor occurences
Get id numbers of parents
Kinship coefficient
Average kinship confidence interval
Average kinship
Kinship above threshold
Get proband id numbers
Ancestors coverage
Get id numbers of siblings
Gene dropping simulations - haplotypes
Convert proband simulation results into sequence data given founder ha...
Compare proband haplotypes for IBD sharing
Trace inheritance path for results from gene dropping simulation
Gene dropping simulations - Probabilities
Gene dropping simulations - Sample
Gene dropping simulations - Frequencies
Gene dropping simulations with specified transmission probabilities
Classes "GLmultiPhiGroup" "GLmultiPhiGroupSingle" `"GLmultiFGroup"...
Class "GLgen"
Class "GLgroup"
Class "GLmultiList"
Classes "GLmultiVector" "GLmultiArray4" "GLmultiMatrix" `"GLmult...
Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations. See: "GENLIB: an R package for the analysis of genealogical data" Gauvin et al. (2015) <doi:10.1186/s12859-015-0581-5>.