GenEst1.4.9 package

Extract AIC and AICc for a carcass persistence model

Create the AICc tables for a set of carcass persistence models

Create the AICc tables for a list of sets of searcher efficiency model...

extract AICc value from pkm object

Create the AICc tables for a set of searcher efficiency models

Create the AICc tables for a list of sets of searcher efficiency model...

Create the AICc tables for a list of sets of searcher efficiency model...

Generic S3 function for summarizing AICc

GenEst Information

GenEst app download funtions

GenEst App Messages

app utilities for formatting text, tables, figs, etc. for display

app panel utility functions

The GenEst server definition function

Create the GenEst User Interface HTML

HTML parameters

app utilities

Create and manage widgets for data input, function execution, data out...

Tabulate an average search schedule from a multi-unit SS data table

Calculate detection probability for given SE and CP parameters and sea...

Estimate the number of fatalities in each search interval throughout t...

Estimate the number of fatalities by up to two splitting covariates

Estimate the number of fatalities by time interval

Check for model components

Checks whether a vector of data can be interpreted as dates

Error check a specific model selection for a CP plot

Error check a specific model selection for an SE plot

Associate CO carcasses with appropriate DWP values (by unit and carcas...

Combine predictors

Combine predictors across models

Count the minimum number of carcasses in the cells

Produce a named vector of standard CP plot colors

Produce the options for the distributions in the CP model

Calculate the negative log-likelihood of a carcass persistence model

Fit cp carcass persistence models

Plot cell-specific decay curve for carcass persistence

Check if a CP model is well-fit

Check if cpm models fail

Remove failed cpm models from a cpmSet object

Check if all of the cpm models fail

Remove failed cpm models from a cpmSetSize object

Plot cell-specific decay curve for carcass persistence

Select the date columns from a data table

Calculate day of study from calendar date

Auto-parsing to find the name of the unit column (unitCol)

Descriptive statistics for a fitted CP model

Create the download version of the Searcher Efficiency model table

Select the DWP-ok columns from a data table

Fit density-weighted proportion (DWP) models.

Estimate all carcass-level detection rates and arrival intervals

Estimate generic g

Estimate generic detection probability for multiple carcass classes

Estimate mortality

Expand a CP model set for plotting

Generalized estimation of mortality

Compute the logit or anti-logit

Transpose a list of arrays

model utility functions (not exported)

Select the columns from a data table that could be CP First Time Absen...

Select the columns from a data table that could be CP Last Time Presen...

Select the columns from a data table that could be SE observations

Calculate the negative log-likelihood of a searcher efficiency model

Fit pk searcher efficiency models.

Check if a pk model is well-fit

Plot parameter box plots for each cell for either p or k

Plot cell-specific decay curve for searcher efficiency

Check if all of the pkm models fail within a given set

Check if pkm models fail

Remove failed pkm models from a pkmSet object

Check if all of the pkm models fail

Remove failed pkm models from a pkmSetSize object

p or k box plots for an SE model set

Plot cell-specific decay curve for searcher efficiency for a specific ...

The CDF of the loglogistic distribution

Plot results of a single CP model

Plot results of a set of CP models

Plot total mortality estimation

Plot results of a single generic ghat estimation

Plot results of a set of size-based generic ghat estimations

Plot results of a single pk model

Plot results of a set of SE models

Plot summary statistics for splits of mortality estimates

Plot summary statistics for splits of mortality estimates

Plot the cellwise results of a single model in a set of CP models

Plot results of a single CP model in a set

The CP plot header

p and k box plots for an SE model set

template box plot

Plot the cellwise results of a single model in a set of SE models

Plot results of a single SE model in a set

The SE plot header

Calculate the probability of persistence to detection

Select the predictor-ok columns from a data table

Prepare predictors based on inputs

Create search schedule data into an prepSS object for convenient split...

Create the pretty version of the Carcass Persistence model table

Create the pretty versions of model and summary tables

Create the pretty version of the split summary table

Print a cpm model object

Print a pkm model object

Quantiles of marginal distributions of $\hat{p}$ and $\hat{k}$

Simulate parameters from a fitted cp model

Simulate parameters from a fitted dwp model

Read in csv files in either format

Return the model with the greatest log-likelihood

Remove selected columns from column names

Simulate parameters from a fitted pk model

Launch the GenEst Application

Produce boxplots p and/or k for all cells for reference model and ...

Produce a named vectory with standard SE plot colors

Plot results of a single SE model in a set

Produce a single panel in an SE summary/diagnostic plot

Calculate decayed searcher efficiency

Calculate conditional probability of observation at a search

Calculate conditional probability of observation after a series of sea...

Calculate decayed searcher efficiency for a single pk

Plot a total mortality estimation for a simple situation

Select the potential carcass class columns from a data table

Summarize total mortality estimation

Summarize the gGeneric list to a simple table

Summarize the gGenericSize list to a list of simple tables

Summarize results of mortality estimate splits

Tidy a CP model set

Tidy an SE model set

Transpose a splitFull array (preserving attributes)

Trim a Model-Set-Size Complex to a Single Model Per Size

Update the inputs when an event occurs

Update the outputs when an event occurs

Update the reactive value list when an event occurs