File Handlers for Genomic Data Analysis
Example Gene Annotation in Bed-Format
Example Sequencing Reads in fasta-Format
Example Sequencing Reads in fastq-Format
Example Gene Annotation in gff-Format
Example Gene Annotation in gtf-Format
Example Variant data in ped/map-Format
Example Variant data in vcf-Format
Example Gene Annotation in zipped gtf-Format
Exporting a Bed File.
Exporting a Fasta File.
R Package To Handle Files From Genomic Data GenomicTools.fileHandler i...
Importing a Bed File.
Import a Tab Delimited Blast Output File
Importing a Fasta File.
Import from FeatureCounts
Importing a Fastq File.
importGFF
importGFF3
Import a GTF File
importPED
importSTARLog
importVCF
importXML
plotTotalReads
plotUniquelyMappedReads
prereadGTF
Print a bed Object
Print a fa Object
Print a featureCounts Object
Print a fq Object
Print a gtf Object
Print a pedMap Object
Print a vcf Object
Summary of a bed Object
Summary of a fa Object
Summary of a featureCounts Object
Summary of a fq Object
Summary of a gtf Object
Summary of a STARLog Object
A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.