Detection and Reconstruction of Muscle Fibers from diceCT Image Data
Check if muscle fiber is close to boundary of muscle
Check if muscle fibers are redundant
A simple wrapper to create colors for a continuous variable
Automated imaging cropping
Automated histogram equalization of image state
Experimental! Calculating the orientation of muscle fibers
Calculate the relative curvature of muscle fibers
Calculated the length of smoothed muscle fibers
Smoothing of estimated fiber paths
Automated repeated fusing of fiber paths
Fuse incomplete fibers
An internal function determining grayscale values
Automated detection of muscle fibers from diceCT scans
tools:::Rd_package_title("GoodFibes")
Finding end points of possible paths
Plot multi muscle fibers with a muscle outline
Plot a single muscle fiber
Plot and export muscle fibers to stl
Line points generator
Quality testing of possible muscle fibers detected by good.fibes
Plot the path of a muscle fiber generated using good.fibes
Plot image from diceCT stack using thresholding
Reconstruction of muscle fibers from image stacks using textural analysis. Includes functions for tracking, smoothing, cleaning, plotting and exporting muscle fibers. Also calculates basic fiber properties (e.g., length and curvature).