HMPTrees1.4 package

Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data

checkTreeValidity

Check Validity of an RDP-Based Taxonomic Tree

compareTwoDataSets

Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Sets...

createAndPlot

Create and Plot a Tree from a Data Set

createTrees

Create a Tree Object

displayLegend

Displays Tree Plot Legend

formatData

Formats a Data Set

generateTree

Generate Test Trees

getMLEandLoglike

Get MLE and Log Likelihood of a Data Set

HMPTrees-internal

Internal Functions

HMPTrees-package

Object Oriented Data Analysis of Taxonomic Trees

mergeDataSets

Merge Multiple Data Sets

pairedCompareTwoDataSets

Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Pair...

plotTree

Plots a Tree Object

plotTreeDataMDS

Plot an MDS Plot of a Group of Trees

trimToTaxaLevel

Trim a Tree to a Given Level

Download source packageRead PDF manual

Tools to model, compare, and visualize populations of taxonomic tree objects.

  • Maintainer: Berkley Shands
  • License: Apache License (== 2.0)
  • Last published: 2017-07-05