Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Calculates confidence limits
Calculate the value of confidence limit
Calculate kinetic data
Calculate deuteration
Plot comparison plot
HaDeX
HaDeX Graphical User Interface
Plot peptide coverage
Plot kinetics data
Plot position frequency
Calculate data
Experiment quality control
Read HDX-MS data file
Reconstruct protein sequence
Plot Woods' plot
Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.