Hierarchical Model of Species Communities
Hmsc: Hierarchical Model of Species Communities
Hmsc
computeVariancePartitioning
alignPosterior
biPlot
Combine Posterior Samples of Several Hmsc Models
computeAssociations
computeDataParameters
computeInitialParameters
computePredictedValues
constructGradient
constructKnots
convertToCodaObject
createPartition
evaluateModelFit
getPostEstimate
Create an Hmsc random level
plotBeta
plotGamma
plotGradient
computeWAIC
plotVariancePartitioning
poolMcmcChains
predict
predictLatentFactor
prepareGradient
sampleMCMC
samplePrior
setPriors.Hmsc
setPriors.HmscRandomLevel
setPriors
Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020) <doi:10.1111/2041-210X.13345>).
Useful links