Composite Spectra Analysis (CSA) for High-Resolution Mass Spectrometry Analyses
Aligned Fragmentation Spectra Annotator
CSA Adduct Annotator
CSA Aligned Meta-Spectra Cataloger
CSA Aligned Peaks Tanimoto Coefficient Calculator
CSA Aligned Table xlsx Analyzer
CSA peakList MSP generation
CSA reference xlsxAnalyzer
CSA workflow
CSA xlsx Analyzer
DDA Fragmentation Peaks Detection
DDA Raw Spectra Deconvolution
DDA Workflow
xlsx Analyzer for DDA analysis
DDA to msp
CSA DIA MS1 Fragmentation Peaks Detection
CSA DIA MS2 Fragmentation Peaks Detection
DIA Workflow
DIA xlsx Analyzer for DIA analysis
IDSL.CSA MSP Generator
IDSL.CSA Reference MSP Generator
IDSL.CSA workflow
IDSL.CSA workflow xlsx Analyzer
A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.