Estimate Global Clustering in Infectious Disease
Bootstrap mean transmission distance values
Estimate transmission distance
Bootstrapped confidence intervals for the change in mean transmission ...
Change in mean transmission distance over time
Estimate transmission distance theta values by replication
Calculate the Infector-Infectee Wallinga-Teunis matrix
Estimate matrix of basic Wallinga-Teunis weights
Cross type K function using homotypic and heterotypic case types
Cross type Pair Correlation Function using homotypic and heterotypic c...
Bootstrap get.pi values.
Calculate bootstrapped confidence intervals for get.pi values.
get the null distribution of the get.pi function
Generalized version of get.pi
runs bootstrapping on get.pi.typed
get the null distribution of the get.pi.typed function
Optimized version of get.pi for typed data.
Bootstrap get.tau values.
Bootstrap confidence interval for the get.tau values
get the null distribution of the get.tau function
generalized version of get.tau
runs bootstrapping for get.tau.typed
get the null distribution for the get.tau.typed function
Optimized version of get.tau for typed data
Bootstrap get.theta values.
Calculate bootstrapped confidence intervals for get.theta values.
get the null distribution of the get.theta function
Generalized version of get.theta
runs bootstrapping on get.theta.typed
get the null distribution of the get.theta.typed function
Optimized version of get.theta for typed data.
Get weights of transmission distance theta
Simulation of an epidemic in space and time
Plot output of simulated epidemic
Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.