ISAT1.0.5 package

Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output

findNN

Find the nearest neighbour (NN) given a cell and a group of cells;

findNNs

Read a file and compute the NN through permutations;

getFileCount

Get the count number of each phenotype for each tissue category

procDist

Extract the statistics from the result given by findNNs

Download source packageRead PDF manual

Reads the output of the 'PerkinElmer InForm' software <http://www.perkinelmer.com/product/inform-cell-analysis-one-seat-cls135781>. In addition to cell-density count, it can derive statistics of intercellular spatial distance for each cell-type.

  • Maintainer: Minyu Wang
  • License: GPL-2
  • Last published: 2018-08-20