ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood function

Compute loglikelihood relevant to kappa for step 2

Computes the part of the loglikelihood function relevant to optimizing kappa for step 2

ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood(kappa, model)

Arguments

• kappa: a 1xK vector strength parameter in the prior over cc given the cancer profile mm
• model: list containing all the parameters to be optimized

Returns

The part of the loglikelihood function relevant to optimizing kappa

Author(s)

Gerald Quon, Catalina Anghel, Francis Nguyen