Score Taxon-Level IgA Binding in IgA-Seq Experiments
IgA Probability
IgA Probability Ratio
Generate various scores for IgA binding in IgA-Seq experiments
Kau Index
Palm Index
Relative Abundance from Counts
Simulate an IgA-Seq dataset from a pre-defined set of IgA-binding prob...
Extract name at a given taxonomic level from a full name in the "p__;c...
Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.